Publications

Scientific publications

  • Hageskal G, et al. Ex situ biofilm enrichment of microbial communities, 2020 (accepted for publication)
  • (Joint MetaFluidics publication) Tauzin, A.S., Pereira, M.R., Van Vliet, L.D. et al. Investigating host-microbiome interactions by droplet based microfluidics. Microbiome 8, 141 (2020). https://doi.org/10.1186/s40168-020-00911-z

  • Bhujbal, S.V., Dekov, M., Ottesen, V. et al. Effect of design geometry, exposure energy, cytophilic molecules, cell type and load in fabrication of single-cell arrays using micro-contact printing. Sci Rep 10, 15213 (2020). https://doi.org/10.1038/s41598-020-72080-w
  • Lamprecht-Grandío M, Cortesão M, Mirete S, Benguigui de la Cámara M, de Figueras CG, Pérez-Pantoja D, White JJ, Farías ME, Rosselló-Móra R and González-Pastor JE (2020) Novel Genes Involved in Resistance to Both Ultraviolet Radiation and Perchlorate From the Metagenomes of Hypersaline Environments. Front. Microbiol. 11:453. doi: 10.3389/fmicb.2020.00453
  • Albuquerque L., Rainey F.A., da Costa M.S., Roxo I., Raposo P., Froufe H., Egas C., Hydrotalea, Bergey’s Manual of Systematics of Archaea and Bacteria, Trujillo ME, Dedysh S, DeVos P, Hedlund B, Kampfer P, Rainey FA and Whitman WB (editors). Published by John Wiley & Sons, Inc., in association with Bergey’s Manual Trust; pp 1-8 (2020). doi.org//10.1002/9781118960608.gbm01442
  • Albuquerque L., Raposo P., Froufe H., Severino R. , Castelhano N., Barroso C., Egas E, da Costa M.S. Comparative genome sequence analysis of several species in the genus and the description of a novel species sp. nov. International Journal of Systematic and Evolutionary Microbiology 70, 1596-1604 (2020). doi.org/10.1099/ijsem.0.003942
  • Albuquerque L., Roxo, I., Raposo P., Froufe H., Egas C., Rainey F.A., da Costa M.S., Cecembia, Bergey’s Manual of Systematics of Archaea and Bacteria, Trujillo ME, Dedysh S, DeVos P, Hedlund B, Kampfer P, Rainey FA and Whitman WB (editors). Published by John Wiley & Sons, Inc., in association with Bergey’s Manual Trust; pp 1-12 (2019). doi.org//10.1002/9781118960608.gbm01443
  • Albuquerque L., Egas C., da Costa M.S., Rubritepida, Bergey’s Manual of Systematics of Archaea and Bacteria, Trujillo ME, Dedysh S, DeVos P, Hedlund B, Kampfer P, Rainey FA and Whitman WB (editors). Published by John Wiley & Sons, Inc., in association with Bergey’s Manual Trust. (2019) https://doi.org/10.1002/9781118960608.gbm01457
  • Laville E, Perrier J, Bejar N, Maresca M, Esque J, Tauzin AS, Bouhajja E, Leclerc M, Drula E, Henrissat B, Berdah S, Di Pasquale E, Robe P and Potocki-Veronese G (2019) Investigating Host Microbiota Relationships Through Functional Metagenomics. Front. Microbiol. 10:1286. doi: 10.3389/fmicb.2019.01286
  • Tauzin A., Bruel L., Laville E., Nicoletti S., Navarro D., Henrissat. B., Potocki-Veronese G., Perrier J., Giardina T., Lafond M. Sucrose 6F-phosphate phosphorylase: a novel insight in the human gut microbiome, Microbial Genomics, 2019 https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000253#tab2
  • Da Costa MS, Albuquerque L., Rainey FA, Froufe HJC, Roxo I, Raposo P, Egas C. The genus Eliorea, Whitman, WB (Ed), Bergey’s Manual of Systematics of Archaea and Bacteria, Wiley, 2019 DOI: 10.1002/9781118960608.gbm01458
  • Lale R, Tietze L, Nesje J, Onsager I, Engelhardt K, Wong CFA, Akan M, Hummel N, Kalinowski J, Rückert C, Hohmann-Marriott MF. A universal method for gene expression engineering, 2019. Preprint available at bioRxiv https://www.biorxiv.org/content/10.1101/644989v1
  • Severino R., Froufe H., Barroso C., Albuquerque L., Lobo-da-Cunha A., Da Costa M.S., Egas C. High-quality draft genome sequence of Gaiella occulta isolated from a 150 meter deep mineral water borehole and comparison with the genome sequences of other deep-branching lineages of the phylum Actinobacteria, MicrobiologyOpen. 2019;e840, 2019. DOI:10.1002/mbo3.840
  • Raposo P., Viver T., Albuquerque L., Froufe H., Barroso C., Egas C., Rosselló-Móra R. , Da Costa M.S. Transfer of Meiothermus chliarophilus (Tenreiro et al.1995) Nobre et al. 1996, Meiothermus roseus Ming et al. 2016, Meiothermus terrae Yu et al. 2014 and Meiothermus timidus Pires et al. 2005, to Calidithermus gen. nov., as Calidithermus chliarophilus comb. nov., Calidithermus roseus comb. nov., Calidithermus terrae comb. nov. and Calidithermus timidus comb. nov., respectively, and emended description of the genus Meiothermus, International Journal of Systematic and Evolutionary Microbiology 69:1060-1069, 2019. DOI: 10.1099/ijsem.0.003270
  • Grimaud F, Pizzut-Serin S, Tarquis L, Ladevèze S, Morel S, Putaux J.L., Potocki-Véronèse G. In Vitro Synthesis and Crystallization of β-1,4-Mannan, Biomacromolecules, 2018, DOI: 10.1021/acs.biomac.8b01457
  • Albuquerque L., Rainey F.A., Da Costa M.S. The genus Tepidamorphus, Whitman, WB (Ed), Bergey’s Manual of Systematics of Archaea and Bacteria, 4th Edition (Ed. William B. Whitman), Wiley, 2018. DOI: 10.1002/9781118960608.gbm01455
  • Albuquerque L., Rainey F.A., Da Costa M.S. The genus Tepidicella, Whitman, WB (Ed), Bergey’s Manual of Systematics of Archaea and Bacteria, 4th Edition (Ed. William B. Whitman), Wiley, 2018. DOI: 10.1002/9781118960608.gbm01464
  • Margesin R, Albuquerque L, Zhang DC, Froufe HJC, Severino R, Roxo I, Egas C and da Costa MS. Solimicrobium silvestre gen. nov., sp. nov., isolated from alpine forest soil, International Journal of Systematic and Evolutionary Microbiology 68, 2491-2498, 2018. DOI: 10.1099/ijsem.0.002861
  • Albuquerque L., Rainey F.A., Da Costa M.S. The genus Aquicella, Whitman, WB (Ed), Bergey’s Manual of Systematics of Archaea and Bacteria, 4th Edition (Ed. William B. Whitman), Wiley, 2018. DOI: 10.1002/9781118960608.gbm01465
  • Albuquerque L., Rainey F.A., Da Costa M.S. The genus Truepera, Whitman, WB (Ed), Bergey’s Manual of Systematics of Archaea and Bacteria, 4th Edition (Ed. William B. Whitman), Wiley, 2018. DOI: 10.1002/9781118960608.gbm01328
  • Albuquerque L., Rainey F.A., Da Costa M.S. The Family Thermaceae, Whitman, WB (Ed), Bergey’s Manual of Systematics of Archaea and Bacteria, 4th Edition (Ed. William B. Whitman), Wiley, 2018. DOI: 10.1002/9781118960608.gbm00477
  • Albuquerque L., Rainey F.A., Da Costa M.S. The genus Meiothermus, Whitman, WB (Ed), Bergey’s Manual of Systematics of Archaea and Bacteria, 4th Edition (Ed. William B. Whitman), Wiley, 2018.. DOI: 10.1002/9781118960608.gbm00476
  • Albuquerque L., Rainey F.A., Da Costa M.S. The family Gaiellaceae, Bergey’s Manual of Systematics of Archaea and Bacteria, 4th Edition (Ed. William B. Whitman), Wiley, 2018. DOI: 10.1002/9781118960608.gbm01469
  • Albuquerque, L., H. Froufe, C. Egas, F. A. Rainey, Milton S. da Costa. The Genus Albidovulum. Bergey’s Manual of Systematics of Archaea and Bacteria, 4th Edition (Ed. William B. Whitman), Wiley, 2018. DOI: 10.1002/9781118960608.gbm01456
  • Dagkesamanskaya A, Langer K, Tauzin A, Rouzeau C, Lestrade D, Potocki-Veronese G, Boitard L, Bibette J, Baudry J, Pompon D, Anton-Leberre V. Use of photoswitchable Fluorescent Proteins for droplet-based microfluidic screening, Journal of Microbiological Methods 147, 59-65, 2018
  • Albuquerque, L., A. R. Polónia, C. Barroso, H. J. C. Froufe, O. Lage, A. Lobo-da-Cunha, C. Egas, Milton S. da Costa. Raineyaorbicola gen. nov., sp. nov. a slightly thermophilic bacterium of the phylum Bacteroidetes and the description of Raineyaceae fam. nov. Int. J. System. Evol. Microbiol., 2018
  • Albuquerque, L., H. Froufe, C. Egas, F. A. Rainey, Milton S. da Costa. The Family Trueperaceae. Bergey’s Manual of Systematics of Archaea and Bacteria, 4th Edition (Ed. William B. Whitman), Wiley, 2018
  • Rubio-Portillo, E.; Kersting, D.; Linares, C.; Ramos-Esplá, A.A.; Antón, J. Biogeographic differences in the microbiome
    and pathobiome of the coral Cladocora
    caespitosa in the Western Mediterranean Sea, Frontiers in Microbiology, 2018
  • Rubio-Portillo, E.; Gago. J.F.; Martínez-García, M.; Vezzulli, L.; Rosselló-Mora, R.; Antón, J.*; Ramos-Esplá, A.A. Vibrio communities in scleractian corals differ according to health status and geographic
    location in the Mediterranean Sea,     Systematic and Applied Microbiology, 2018
  • L. Ufarté, E. Laville, S. Duquesne, D. Morgavi, P. Robe, C. Klopp, A. Rizzo, S. Pizzut-Serin and G. Potocki-Veronese. Discovery of carbamate degrading enzymes by functional metagenomics, PLOS One, 2017
  • Blesa, N. Quintans, I. Baquedano, C. Mata, J. Castón, J. Berenguer. Role of Archaeal HerA Protein in the Biology of the Bacterium Thermus thermophilus.Genes, Multidisciplinary Digital Publishing Institute (MDPI), 2017
  • Ibáñez de Aldecoa, A.L., Zafra, O., González-Pastor, J.E. Mechanisms and Regulation of Extracellular DNA Release and Its Biological Roles in Microbial Communities. Front Microbiol. 2017 Jul 26;8:1390. doi: 10.3389/fmicb.2017.01390.